Our Team has written a LOT of peer-reviewed academic journal articles advancing Pandemic Science!

Albery, G. F., Carlson, C. J., Cohen, L. E., Eskew, E. A., Gibb, R., Ryan, S. J., Sweeny, A. R., & Becker, D. J. (2022). Urban-adapted mammal species have more known pathogens. Nature Ecology & Evolution, 6(6), 794-801.

Albery, G. F., Carlson, C. J., Cohen, L. E., Eskew, E. A., Gibb, R., Ryan, S. J., Sweeny, A. R., & Becker, D. J. (2022). Urban-adapted mammal species have more known pathogens. Nature Ecology & Evolution, 6(6), 794-801.

​Alavinejad, M., Tosato, N., Bragazzi, N.L., McCarthy, Z., Wu, J. and Bourouiba, L. (2024). Markers of community outbreak and facility type for mitigation of COVID-19 in long-term care homes in Ontario, Canada: insights and implications from a time-series analysis. Annals of Epidemiology, 90, 9-20.

Ashworth, M., Thunström, L., Cherry, T. L., Newbold, S. C., & Finnoff, D. C. (2021). Emphasize personal health benefits to boost COVID-19 vaccination rates. Proceedings of the National Academy of Sciences, 118(32), e2108225118.

Azad, F. T., Dodge, R. W., Varghese, A. M., Lee, J., Pedrielli, G., Candan, K. S., & Chowell-Puente, G. (2022). Sirtem: Spatially informed rapid testing for epidemic modeling and response to covid-19. ACM Transactions on Spatial Algorithms and Systems, 8(4), 1-43.

Bahl, P., Doolan, C., de Silva, C., Chughtai, A. A., Bourouiba, L. and MacIntyre, C. R. (2022). Airborne or droplet precautions for health workers treating coronavirus disease 2019? Journal of Infectious Diseases, 225(9), 1561-1568.

Baker, E., Jensen, A., Miller, D., Garrett, K. B., Cleveland, C. A., Brown, J., Van Why, K., & Gerhold, R. (2023). Hepatozoon spp. infection in wild canids in the eastern United States. Parasites & Vectors, 16(1), 372.

Balachandar, S., Zaleski, S., Soldati, A., Ahmadi, G., and Bourouiba, L. (2020). Host-to-host airborne transmission as a multiphase flow problem for science-based social distance guidelines. The International Journal of Multiphase Flow, 132, 103439.

Beattie, U. K., Rosen, E. S., Fefferman, N., & Romero, L. M. (2023). House sparrows prioritize skin repair over constitutive innate immunity during long‐term chronic stress. Journal of Experimental Zoology Part A: Ecological and Integrative Physiology, 339(5), 464-473.

Berger, A., James, T. G., & Ryan, S. J. (2022). HIV-Related Stigma Moderates the Relation Between Perceived Susceptibility and HIV Testing Intention Among Heterosexual (but Not Sexual Minority) College Students. Health Promotion Practice, 23(6), 950-954.

Berry, K., & Finnoff, D. (2016). Choosing between adaptation and prevention with an increasing probability of a pandemic. Journal of Economic Behavior & Organization, 132, 177-192.

Berry, K., Finnoff, D., Horan, R. D., & Shogren, J. F. (2015). Managing the endogenous risk of disease outbreaks with non-constant background risk. Journal of Economic Dynamics and Control, 51, 166-179.

Berry, K., Horan, R. D., Finnoff, D., Pompa, R., & Daszak, P. (2022). Investing to Both Prevent and Prepare for COVID-XX. Ecohealth, 19(1), 114-123.

Bhattarai, S., Blackburn, J. K., & Ryan, S. J. (2022). Malaria transmission in Nepal under climate change: anticipated shifts in extent and season, and comparison with risk definitions for intervention. Malaria Journal, 21(1), 390.

Bhattarai, S., Blackburn, J. K., & Ryan, S. J. (2023). Analyzing Spatial and Temporal Patterns of Designated Malaria Risk Areas in Nepal from 2018 to 2021. Vector-Borne and Zoonotic Diseases.

Bhattarai, S., Blackburn, J. K., McKune, S. L., & Ryan, S. J. (2023). Spatio-temporal patterns of malaria in Nepal from 2005 to 2018: A country progressing towards malaria elimination. Spatial and Spatio-temporal Epidemiology, 45, 100576.

Bourouiba, L. (2021). Fluid dynamics of respiratory infectious diseases. Annual review of biomedical engineering, 23, 547-577. https://www.annualreviews.org/doi/pdf/10.1146/annurev-bioeng-111820-025044

Bourouiba, L. (2021). The fluid dynamics of disease transmission. Annual Review of Fluid Mechanics, 53, 473-508.

Bourouiba, L. (2020). Turbulent gas clouds and respiratory pathogen emissions: Potential implications for reducing transmission of COVID-19. Journal of the American Medical Association (JAMA), 323(18), 1837–1838.

Brizuela, N. G., García-Chan, N., Gutierrez Pulido, H., & Chowell, G. (2021). Understanding the role of urban design in disease spreading. Proceedings of the Royal Society A, 477(2245), 20200524.

Bromberg, Y., & Radivojac, P. (2022). Computational interpretation of human genetic variation. Human Genetics, 141(10), 1545-1548.

Bromberg, Y., Aptekmann, A. A., Mahlich, Y., Cook, L., Senn, S., Miller, M., Nanda, V., Ferreiro, D. U., & Falkowski, P. G. (2022). Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer. Science advances, 8(2), eabj3984.

Brunner, J. L., Olson, D. H., Gray, M. J., Miller, D. L., & Duffus, A. L. (2021). Global patterns of ranavirus detections. Facets, 6(1), 912-924.

Buch, K. R., & Fefferman, N. H. (2023). Mathematical Model of Basal Sprout Production in Vector-Borne Tree Disease. Forests, 14(2), 349.

Bussolari, C., Packman, W., Currin-McCulloch, J., Strand, E., & Kogan, L. (2022). Mass Depopulation of Swine during COVID-19: An Exploration of Swine Veterinarians’ Perspectives. Veterinary Sciences, 9(10), 563.

Cai, J., Li, S., Hu, D., Xu, Y., & He, Q. (2022). Nationwide assessment of energy costs and policies to limit airborne infection risks in US schools. Journal of Building Engineering, 45, 103533.

Carlson, C. J., Colwell, R., Hossain, M. S., Rahman, M. M., Robock, A., Ryan, S. J., Alam, M. S., & Trisos, C. H. (2022). Solar geoengineering could redistribute malaria risk in developing countries. Nature communications, 13(1), 2150.

Carrignon, S., Bentley, R. A., Silk, M., & Fefferman, N. H. (2022). How social learning shapes the efficacy of preventative health behaviors in an outbreak. PLoS One, 17(1), e0262505.

Carter, E. D., Bletz, M. C., Le Sage, M., LaBumbard, B., Rollins-Smith, L. A., Woodhams, D. C., Miller, D. L., & Gray, M. J. (2021). Winter is coming–Temperature affects immune defenses and susceptibility to Batrachochytrium salamandrivorans. PLOS pathogens, 17(2), e1009234.

Chapman, A., Verdery, A. M., & Moody, J. (2022). Analytic advances in social networks and health in the twenty-first century. Journal of health and social behavior, 63(2), 191-209.

Chen, B., Sweeny, A. R., Wu, V. Y., Christofferson, R. C., Ebel, G., Fagre, A. C., Gallichotte, E., Kading, R. C., Ryan, S. J., & Carlson, C. J. (2023). Exploring the Mosquito–Arbovirus Network: A Survey of Vector Competence Experiments. The American Journal of Tropical Medicine and Hygiene, 108(5), 987.

Chen, J. S., Pettifor, A. E., Nelson, J. A., Phiri, S., Pasquale, D. K., Kumwenda, W., Kamanga, G., Cottrell, M. L., Sykes, C., & Kashuba, A. D. (2022). Brief Report: Blood and Genital Fluid Viral Load Trajectories Among Treated and Untreated Persons With Acute HIV Infection in Malawi. JAIDS Journal of Acquired Immune Deficiency Syndromes, 90(1), 56-61.

Chowell, G., Dahal, S., Liyanage, Y. R., Tariq, A., & Tuncer, N. (2023). Structural identifiability analysis of epidemic models based on differential equations: a tutorial-based primer. Journal of Mathematical Biology, 87(6), 79.

Chowell, G., Dahal, S., Tariq, A., Roosa, K., Hyman, J. M., & Luo, R. (2022). An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA. PLOS Computational Biology, 18(10), e1010602.

Dallas, T. A., J. Carlson, C., Stephens, P. R., Ryan, S. J., & Onstad, D. W. (2022). InsectDisease: programmatic access to the Ecological Database of the World's Insect Pathogens. Ecography, 2022(12), e06152.

Dallas, T., Ryan, S. J., Bellekom, B., Fagre, A. C., Christofferson, R., & Carlson, C. J. (2021). Predicting the tripartite network of mosquito-borne disease. EcoEvoRxiv(Preprint). https://doi.org/https://doi.org/10.32942/osf.io/xzmp8

Dangerfield, C., Fenichel, E. P., Finnoff, D., Hanley, N., Heap, S. H., Shogren, J. F., & Toxvaerd, F. (2022). Challenges of integrating economics into epidemiological analysis of and policy responses to emerging infectious diseases. Epidemics, 39, 100585.

Dennis, A. M., Cressman, A., Pasquale, D., Frost, S. D., Kelly, E., Guy, J., Mobley, V., Samoff, E., Hurt, C. B., & Mcneil, C. (2022). Intersection of syphilis and human immunodeficiency virus (HIV) networks to identify opportunities to enhance HIV prevention. Clinical Infectious Diseases, 74(3), 498-506.

El Moustaid, F., Thornton, Z., Slamani, H., Ryan, S. J., & Johnson, L. R. (2021). Predicting temperature-dependent transmission suitability of bluetongue virus in livestock. Parasites & Vectors, 14(1), 1-14.

Elbadry, M. A., Efstathion, C. A., Qualls, W. A., Tagliamonte, M. S., Alam, M. M., Khan, M. S. R., Ryan, S. J., Charrel, R. N., Bangonan, L., & Salemi, M. (2023). Diversity and Genetic Reassortment of Keystone Virus in Mosquito Populations in Florida. The American Journal of Tropical Medicine and Hygiene, 108(6), 1256.

Evans, M., Ramiadantsoa, T., Kauffman, K., Moody, J., Nunn, C., Rabezara, J., Raharimalala, P., Randriamoria, T., Soarimalala, V., & Titcomb, G. Leveraging social network topology could improve the efficiency of SARS-CoV-2 epidemic control strategies in resource-limited contexts.

Fagre, A. C., Cohen, L. E., Eskew, E. A., Farrell, M., Glennon, E., Joseph, M. B., Frank, H. K., Ryan, S. J., Carlson, C. J., & Albery, G. F. (2022). Assessing the risk of human‐to‐wildlife pathogen transmission for conservation and public health. Ecology Letters, 25(6), 1534-1549.

Fefferman, N. H., Blacker, K.-A., Price, C. A., & LoBue, V. (2022). When do children avoid infection risks: Lessons for schools during the COVID-19 pandemic. Iscience.

Fefferman, N. H., Blum, M. J., Bourouiba, L., Gibson, N. L., He, Q., Miller, D. L., Papes, M., Pasquale, D. K., Verheyen, C., & Ryan, S. J. (2023). The Case for Controls: Identifying outbreak risk factors through case-control comparisons. arXiv preprint arXiv:2311.02226.

Fefferman, N. H., McAlister, J. S., Akpa, B. S., Akwataghibe, K., Azad, F. T., Barkley, K., Bleichrodt, A., Blum, M. J., Bourouiba, L., & Bromberg, Y. (2023). A New Paradigm for Pandemic Preparedness. Current Epidemiology Reports, 1-12.

Fefferman, N. H., Price, C. A., & Stringham, O. C. (2022). Considering humans as habitat reveals evidence of successional disease ecology among human pathogens. PLoS Biology, 20(9), e3001770.

Fefferman, N. H., Silk, M. J., Pasquale, D. K., & Moody, J. (2021). Homophily in risk and behavior complicate understanding the COVID-19 epidemic curve. medRxiv, 2021.2003. 2016.21253708.

Fefferman, N., Chen, C.-F., Bonilla, G., Nelson, H., & Kuo, C.-P. (2021). How limitations in energy access, poverty, and socioeconomic disparities compromise health interventions for outbreaks in urban settings. Iscience, 24(12).

Gibb, R., Albery, G. F., Becker, D. J., Brierley, L., Connor, R., Dallas, T. A., Eskew, E. A., Farrell, M. J., Rasmussen, A. L., & Ryan, S. J. (2021). Data proliferation, reconciliation, and synthesis in viral ecology. BioScience, 71(11), 1148-1156.

Gibb, R., Albery, G. F., Mollentze, N., Eskew, E. A., Brierley, L., Ryan, S. J., Seifert, S. N., & Carlson, C. J. (2022). Mammal virus diversity estimates are unstable due to accelerating discovery effort. Biology letters, 18(1), 20210427.

Gignoux‐Wolfsohn, S. A., Pinsky, M. L., Kerwin, K., Herzog, C., Hall, M., Bennett, A. B., Fefferman, N. H., & Maslo, B. (2021). Genomic signatures of selection in bats surviving white‐nose syndrome. Molecular Ecology, 30(22), 5643-5657.

Goodman, R. M., Carter, E. D., & Miller, D. L. (2021). Influence of herbicide exposure and ranavirus infection on growth and survival of juvenile red-eared slider turtles (Trachemys scripta elegans). Viruses, 13(8), 1440.

Grandison, B., Yin, H., Kilgore, A., Young, M., Jiao, J., & Fefferman, N. (2023). Epidemiology, Game Theory, and Evolutionary Rescue. Letters in Biomathematics, 10(1), 75–86-75–86.

Greenhalgh, T, Peng, Z., Jimenez, Z., L., Bahnfleth, W., Dancer, S., J. and Bourouiba, L. (2022). Quantifying transmission risk of SARS-CoV-2 in different situations. The British Medical Journal, 376, o106.

Grunnill, M., Arino, J., McCarthy, Z., Bragazzi, N.L., Coudeville, L., Thommes, E.W., Amiche, A., Ghasemi, A., Bourouiba, L., Tofighi, M., Asgary, A., Baky-Haskuee, M. and Wu, J. (2024). Modelling Disease Mitigation at Mass Gatherings: A Case Study of COVID-19 at the 2022 FIFA World Cup. PLOS Computational Biology, 20(1), e1011018.

Hardman, R. H., Ammar, S., Gerhold, R., Sutton, W., Carter, E. D., Snyder, S., Neto, J. d. S., Tarkington, M., Gray, M. J., & Miller, D. L. (2023). Coccidiosis in Wild Eastern Newts (Notophthalmus viridescens): An Unexpected Finding in Consecutive Mortality Events in Tennessee, USA. The Journal of Wildlife Diseases, 59(3), 479-486.

Hardman, R. H., Reinert, L. K., Irwin, K. J., Oziminski, K., Rollins-Smith, L., & Miller, D. L. (2023). Disease state associated with chronic toe lesions in hellbenders may alter anti-chytrid skin defenses. Scientific reports, 13(1), 1982.

Hasenjager, M. J., Guo, X., Pinter-Wollman, N., & Fefferman, N. H. (2023). Designing sustainable systems using nature’s toolbox. Sustainability Science, 18(6), 2787-2793.

Helgert, N. D., Miller, D. L., Ward, D. A., Diane, V., & Hendrix, D. (2022). Pathology in Practice. J. Am. Vet. Med. Assoc., 259(S2). https://doi.org/10.2460/javma.20.03.0153

Hoarfrost, A., Aptekmann, A., Farfañuk, G., & Bromberg, Y. (2022). Deep learning of a bacterial and archaeal universal language of life enables transfer learning and illuminates microbial dark matter. Nature communications, 13(1), 2606.

Hoyer-Leitzel, A., Iams, S., Haslam-Hyde, A., Zeeman, M. L., & Fefferman, N. (2023). An immuno-epidemiological model for transient immune protection: A case study for viral respiratory infections. Infectious Disease Modelling, 8(3), 855-864.

Jackson, K. C., Short, C. T., Toman, K. R., Mietchen, M. S., Lofgren, E., & Program, C. M.-H. (2022). Transient dynamics of infection transmission in a simulated intensive care unit. PLoS One, 17(2), e0260580.

James, T. G., Gebru, N. M., Ryan, S. J., & Cheong, J. (2021). Measuring dimensions of HIV-related stigma among college students. Stigma and Health, 6(3), 296.

Jiao, J., & Fefferman, N. (2021). The dynamics of evolutionary rescue from a novel pathogen threat in a host metapopulation. Scientific reports, 11(1), 10932.

Jiao, J., Suarez, G. P., & Fefferman, N. H. (2021). How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy. PLOS Computational Biology, 17(6), e1008762.

Johnson, S. S., Jackson, K. C., Mietchen, M. S., Sbai, S., Schwartz, E. J., & Lofgren, E. T. (2021). Excess risk of COVID-19 to university populations resulting from in-person sporting events. International Journal of Environmental Research and Public Health, 18(16), 8260.

Jones, N, R., Queshi, Z., Temple, R., Larwood, J. P. J., Greenhalgh, T., and Bourouiba, L. (2020). Two metres or one: what is the evidence base for physical distancing in the context of COVID-19? The British Medical Journal, 370, m3223.

Krishnan, R., Cenci, S., & Bourouiba, L. (2022). Mitigating bias in estimating epidemic severity due to heterogeneity of epidemic onset and data aggregation. Annals of Epidemiology, 65, 1-14.

Kuschke, S. G., Wyneken, J., Cray, C., Turla, E., Kinsella, M., & Miller, D. L. (2023). Fusarium spp. an emerging fungal threat to leatherback (Dermochelys coriacea) eggs and neonates. Frontiers in Marine Science, 10, 1170376.

Larsen, D. A., Makaure, J., Ryan, S. J., Stewart, D., Traub, A., Welsh, R., Love, D. H., & Bisesi Jr, J. H. (2021). Implications of insecticide-treated mosquito net fishing in lower income countries. Environmental Health Perspectives, 129(1), 015001.

Lemanski, N., Silk, M., Fefferman, N., & Udiani, O. (2021). How territoriality reduces disease transmission among social insect colonies. Behavioral Ecology and Sociobiology, 75, 1-13.

Li, S., Xu, Y., Cai, J., Hu, D., & He, Q. (2021). Integrated environment-occupant-pathogen information modeling to assess and communicate room-level outbreak risks of infectious diseases. Building and Environment, 187, 107394.

Liang, J., Swanson, C. S., Wang, L., & He, Q. (2021). Impact of building closures during the COVID-19 pandemic on Legionella infection risks. American Journal of Infection Control, 49(12), 1564-1566.

Lippi, C. A., Canfield, S., Espada, C., Gaff, H. D., & Ryan, S. J. (2023). Estimating the distribution of Oryzomys palustris, a potential key host in expanding rickettsial tick‐borne disease risk. Ecosphere, 14(3), e4445.

Lippi, C. A., Gaff, H. D., Nadolny, R. M., & Ryan, S. J. (2023). Newer Surveillance Data Extends our Understanding of the Niche of Rickettsia montanensis (Rickettsiales: Rickettsiaceae) Infection of the American Dog Tick (Acari: Ixodidae) in the United States. Vector-Borne and Zoonotic Diseases, 23(6), 316-323.

Lippi, C. A., Gaff, H. D., White, A. L., & Ryan, S. J. (2021). Scoping review of distribution models for selected Amblyomma ticks and rickettsial group pathogens. PeerJ, 9, e10596.

Lippi, C. A., Mundis, S. J., Sippy, R., Flenniken, J. M., Chaudhary, A., Hecht, G., Carlson, C. J., & Ryan, S. J. (2023). Trends in mosquito species distribution modeling: insights for vector surveillance and disease control. Parasites & Vectors, 16(1), 302.

Lippi, C. A., Ryan, S. J., White, A. L., Gaff, H. D., & Carlson, C. J. (2021). Trends and opportunities in tick-borne disease geography. Journal of Medical Entomology, 58(6), 2021-2029.

Lippi, C. A., Stewart-Ibarra, A. M., Endy, T. P., Abbott, M., Cueva, C., Heras, F., Polhemus, M., Beltrán-Ayala, E., & Ryan, S. J. (2021). Exploring the utility of social-ecological and entomological risk factors for dengue infection as surveillance indicators in the dengue hyper-endemic city of Machala, Ecuador. PLoS neglected tropical diseases, 15(3), e0009257.

LoBue, V., Bonawitz, E., Leotti, L., & Fefferman, N. (2023). How Children Develop Healthy Behavioral Choices to Promote Illness Prevention. Current Directions in Psychological Science, 32(1), 3-9.

Lofgren, E. T., Lum, K., Horowitz, A., Mabubuonwu, B., Meyers, K., & Fefferman, N. H. (2022). Carceral Amplification of COVID-19: Impacts for Community, Corrections Officer, and Incarcerated Population Risks. Epidemiology (Cambridge, Mass.), 33(4), 480.

Lofgren, E. T., Mietchen, M., Dicks, K. V., Moehring, R., & Anderson, D. (2021). Estimated Methicillin-Resistant Staphylococcus aureus Decolonization in Intensive Care Units Associated With Single-Application Chlorhexidine Gluconate or Mupirocin. JAMA Network Open, 4(3), e210652-e210652.

Lofgren, E., Naumova, E. N., Gorski, J., Naumov, Y., & Fefferman, N. H. (2022). How drivers of seasonality in respiratory infections may impact vaccine strategy: a case study in how COVID-19 may help us solve one of influenza’s biggest challenges. Clin Infect Dis, 75(Suppl 1), S121-129.

Madhobi, K. F., Kalyanaraman, A., Anderson, D. J., Ashley, E. D., Moehring, R. W., & Lofgren, E. T. (2022). Use of Contact Networks to Estimate Potential Pathogen Risk Exposure in Hospitals. JAMA Network Open, 5(8), e2225508-e2225508.

Mahlich, Y., Zhu, C., Chung, H., Velaga, P. K., De Paolis Kaluza, M. C., Radivojac, P., Friedberg, I., & Bromberg, Y. (2023). Learning from the unknown: exploring the range of bacterial functionality. Nucleic Acids Research, 51(19), 10162-10175.

Martin, J. L., Stewart-Ibarra, A. M., Ayala, E. B., Mordecai, E. A., Sippy, R., Heras, F. H., Blackburn, J. K., & Ryan, S. J. (2020). Household and climate factors influence Aedes aegypti risk in the arid city of Huaquillas, Ecuador. bioRxiv, 2020.2005. 2019.104372.

McCoy, K. D., Weldon, C. T., Ansumana, R., Lamin, J. M., Stenger, D. A., Ryan, S. J., Bardosh, K., Jacobsen, K. H., & Dinglasan, R. R. (2021). Are malaria transmission-blocking vaccines acceptable to high burden communities? Results from a mixed methods study in Bo, Sierra Leone. Malaria Journal, 20(1), 1-12.

Meisner, J., Baszler, T. V., Kuehl, K. E., Ramirez, V., Baines, A., Frisbie, L. A., Lofgren, E. T., de Avila, D. M., Wolking, R. M., & Bradway, D. S. (2022). Household transmission of SARS-CoV-2 from humans to pets, Washington and Idaho, USA. Emerging Infectious Diseases, 28(12), 2425.

Moody, J. W., Keister, L. A., & Pasquale, D. K. (2021). Community effectiveness of masks and vaccines. Socius, 7, 23780231211058026.

Mundis, S. J., Hamerlinck, G., Stone, E. K., Whiteman, A., Delmelle, E., Rapp, T., Dulin, M., & Ryan, S. J. (2021). Examining Wing Length–Abundance Relationships and Pyrethroid Resistance Mutations among Aedes albopictus in a Rapidly Growing Urban Area with Implications for Mosquito Surveillance and Control. International Journal of Environmental Research and Public Health, 18(18), 9443.

Mundis, S. J., Harrison, S., Pelley, D., Durand, S., & Ryan, S. J. (2022). Spatiotemporal Environmental Drivers of Eastern Equine Encephalitis Virus in Central Florida: Towards a Predictive Model for a Lethal Disease. Journal of Medical Entomology, 59(5), 1805-1816.

Newbold, S. C., Ashworth, M., Finnoff, D., Shogren, J. F., & Thunström, L. (2023). Physical distancing versus testing with self-isolation for controlling an emerging epidemic. Scientific reports, 13(1), 8185.

Newbold, S. C., Finnoff, D., Thunström, L., Ashworth, M., & Shogren, J. F. (2020). Effects of physical distancing to control COVID-19 on public health, the economy, and the environment. Environmental and Resource Economics, 76, 705-729.

Ngonghala, C. N., Ryan, S. J., Tesla, B., Demakovsky, L. R., Mordecai, E. A., Murdock, C. C., & Bonds, M. H. (2021). Effects of changes in temperature on Zika dynamics and control. Journal of the Royal Society Interface, 18(178), 20210165.

Nguyen, D., Wakhare, T., Jiao, J., Myers, K., Udiani, O., & Fefferman, N. H. (2022). Seasonality in multi-host disease systems. Ecological Modelling, 470, 109973.

Nikc, K., Albery, G. F., Becker, D. J., Eskew, E. A., Fagre, A. C., Ryan, S. J., & Carlson, C. J. (2022). Viral diversity and zoonotic risk in endangered species. bioRxiv, 2022.2006. 2027.497730.

Omulo, S., Lofgren, E. T., Lockwood, S., Thumbi, S. M., Bigogo, G., Ouma, A., Verani, J. R., Juma, B., Njenga, M. K., & Kariuki, S. (2021). Carriage of antimicrobial-resistant bacteria in a high-density informal settlement in Kenya is associated with environmental risk-factors. Antimicrobial Resistance & Infection Control, 10(1), 1-12.

Pasquale, D. K., Doherty, I. A., Leone, P. A., Dennis, A. M., Samoff, E., Jones, C. S., Barnhart, J., & Miller, W. C. (2021). Lost and found: applying network analysis to public health contact tracing for HIV. Applied network science, 6, 1-16.

Pasquale, D. K., Welsh, W., Olson, A., Yacoub, M., Moody, J., Gomez, B. A. B., Bentley-Edwards, K. L., McCall, J., Solis-Guzman, M. L., & Dunn, J. P. (2023). Scalable Strategies to Increase Efficiency and Augment Public Health Activities During Epidemic Peaks. Journal of Public Health Management and Practice, 29(6), 863-873.

Peng, Z., Rojas, A.L., Kropff, E., Bahnfleth, W., Buonanno, G., Dancer, S.J., Kurnitski, J., Li, Y., Loomans, M.G.L.C., Marr, L.C., Morawska, L., Nazaroff, W., Noakes, C., Querol, X., Sekhar, C., Tellier, R., Greenhalgh, T., Bourouiba, L., Boerstra, A., Tang, J.W., Miller, S.L. and Jimenez, J.L. (2022). Practical Indicators for Risk of Airborne Transmission in Shared Indoor Environments and Their Application to COVID-19 Outbreaks. Environmental Science & Technology, 56(2), 1125–1137.

Peterson, A. C., Ghersi, B. M., Riegel, C., Wunder Jr, E. A., Childs, J. E., & Blum, M. J. (2021). Amplification of pathogenic Leptospira infection with greater abundance and co‐occurrence of rodent hosts across a counter‐urbanizing landscape. Molecular Ecology, 30(9), 2145-2161.

Pike, J., Shogren, J. F., Aadland, D., Viscusi, W. K., Finnoff, D., Skiba, A., & Daszak, P. (2020). Catastrophic risk: waking up to the reality of a pandemic? Ecohealth, 17, 217-221.

Pritchard, A. J., Silk, M. J., & Fefferman, N. H. (2023). Influence of Lived Experiences on Public Responses to Future Diseases via (De) Sensitization of Concern. Disaster Medicine and Public Health Preparedness, 17, e251.

Pritchard, A. J., Silk, M. J., Carrignon, S., Bentley, R. A., & Fefferman, N. H. (2022). Balancing timeliness of reporting with increasing testing probability for epidemic data. Infectious Disease Modelling, 7(2), 106-116.

Pritchard, A. J., Silk, M. J., Carrignon, S., Bentley, R. A., & Fefferman, N. H. (2022). How reported outbreak data can shape individual behavior in a social world. Journal of Public Health Policy, 43(3), 360-378.

Randall, K., Ewing, E. T., Marr, L. C., Jimenez, J., & Bourouiba, L. (2021). How did we get here: what are droplets and aerosols and how far do they go? A historical perspective on the transmission of respiratory infectious diseases. Interface Focus, 11(6), 20210049. https://doi.org/https://doi.org/10.1098/rsfs.2021.0049

Roosa, K., & Fefferman, N. H. (2022). A general modeling framework for exploring the impact of individual concern and personal protection on vector-borne disease dynamics. Parasites & Vectors, 15(1), 1-10.

Ruck, D. J., Bentley, R. A., & Borycz, J. (2021). Early warning of vulnerable counties in a pandemic using socio-economic variables. Economics & Human Biology, 41, 100988.

Ruck, D. J., Borycz, J., & Bentley, R. A. (2021). Cultural values predict national COVID-19 death rates. SN Social Sciences, 1, 1-11.

Ryan, S. J., Carlson, C. J., Tesla, B., Bonds, M. H., Ngonghala, C. N., Mordecai, E. A., Johnson, L. R., & Murdock, C. C. (2021). Warming temperatures could expose more than 1.3 billion new people to Zika virus risk by 2050. Global Change Biology, 27(1), 84-93.

Ryan, S. J., Lippi, C. A., & Stewart-Ibarra, A. M. (2023). Mapping geographic and demographic shifts in container breeding mosquito-borne disease transmission suitability in Central and South America in a warming world. medRxiv, 2023.2010. 2003.23296495.

Ryan, S. J., Lippi, C. A., Caplan, T., Diaz, A., Dunbar, W., Grover, S., Johnson, S., Knowles, R., Lowe, R., & Mateen, B. A. (2023). The current landscape of software tools for the climate-sensitive infectious disease modelling community. The Lancet Planetary Health, 7(6), e527-e536.

Ryan, S. J., Lippi, C. A., Villena, O. C., Singh, A., Murdock, C. C., & Johnson, L. R. (2023). Mapping current and future thermal limits to suitability for malaria transmission by the invasive mosquito Anopheles stephensi. Malaria Journal, 22(1), 104.

Scoresby, K., Jurney, C., Fackler, A., Tran, C. V., Nugent, W., & Strand, E. (2023). Relationships between diversity demographics, psychological distress, and suicidal thinking in the veterinary profession: a nationwide cross-sectional study during COVID-19. Frontiers in veterinary science, 10.

Silk, M. J., & Fefferman, N. H. (2021). The role of social structure and dynamics in the maintenance of endemic disease. Behavioral Ecology and Sociobiology, 75(8), 122.

Silk, M. J., Carrignon, S., Bentley, R. A., & Fefferman, N. H. (2021). Improving pandemic mitigation policies across communities through coupled dynamics of risk perception and infection. Proceedings of the Royal Society B, 288(1955), 20210834.

Silk, M. J., Carrignon, S., Bentley, R. A., & Fefferman, N. H. (2022). Observations and conversations: how communities learn about infection risk can impact the success of non-pharmaceutical interventions against epidemics. BMC Public Health, 22, 1-12.

Silk, M. J., Wilber, M. Q., & Fefferman, N. H. (2022). Capturing complex interactions in disease ecology with simplicial sets. Ecology Letters, 25(10), 2217-2231.

Sisk, A., & Fefferman, N. (2022). A network theoretic method for the basic reproductive number for infectious diseases. Methods in Ecology and Evolution, 13(11), 2503-2515.

Sisk, A., Bamwine, P., Day, J., & Fefferman, N. (2022). Linking immuno-epidemiology principles to violence. BMC Public Health, 22(1), 1-8.

Sottile, M., Iles, R., McConnel, C., Amram, O., & Lofgren, E. (2021). PastoralScape: an environment-driven model of vaccination decision making within pastoralist groups in East Africa. Journal of Artificial Societies and Social Simulation, 24(LLNL-JRNL-814398).

Stewart-Ibarra, A. M., Rollock, L., Best, S., Brown, T., Diaz, A. R., Dunbar, W., Lippi, C. A., Mahon, R., Ryan, S. J., & Trotman, A. (2022). Co-learning during the co-creation of a dengue early warning system for the health sector in Barbados. BMJ global health, 7(1).

Thunström, L., Ashworth, M., Finnoff, D., & Newbold, S. C. (2021). Hesitancy toward a COVID-19 vaccine. Ecohealth, 18(1), 44-60.

Thunström, L., Ashworth, M., Shogren, J. F., Newbold, S., & Finnoff, D. (2021). Testing for COVID-19: willful ignorance or selfless behavior? Behavioural Public Policy, 5(2), 135-152.

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Towe, A. E., Gray, M. J., Carter, E. D., Wilber, M. Q., Ossiboff, R. J., Ash, K., Bohanon, M., Bajo, B. A., & Miller, D. L. (2021). Batrachochytrium salamandrivorans can devour more than salamanders. The Journal of Wildlife Diseases, 57(4), 942-948.

Uelmen Jr, J. A., Lamcyzk, B., Irwin, P., Bartlett, D., Stone, C., Mackay, A., Arsenault-Benoit, A., Ryan, S. J., Mutebi, J.-P., & Hamer, G. L. (2023). Human biting mosquitoes and implications for West Nile virus transmission. Parasites & Vectors, 16(1), 2.

Varela, G., Swanson, K., Pasquale, D. K., Mohanan, M., & Moody, J. W. (2022). Visualizing COVID Restrictions: Activity Patterns Before, During, and After COVID-19 Lockdowns in Uttar Pradesh, India. Socius, 8, 23780231221117962.

Verheyen, C., and Bourouiba, L. (2022). Associations between indoor relative humidity and global COVID-19 outcomes. Journal of the Royal Society Interface, 19(196), 20210865.

Villena, O. C., Arab, A., Lippi, C. A., Ryan, S. J., & Johnson, L. R. (2023). How environmental, geographic, socio-demographic, and epidemiological indicators influence malaria prevalence.

Villena, O. C., Ryan, S. J., Murdock, C. C., & Johnson, L. R. (2022). Temperature impacts the transmission of malaria parasites by Anopheles gambiae and Anopheles stephensi mosquitoes. bioRxiv, 2020.2007. 2008.194472.

Vuong, L., Bidwell, J. T., Apesoa-Varano, E. C., Cothran, F. A., & Catz, S. L. (2022). COVID-19 vaccine hesitancy and intent in California registered nurses. Vaccine: X, 11, 100162.

Walker, M. A., Uribasterra, M., Asher, V., Getz, W. M., Ryan, S. J., Ponciano, J. M., & Blackburn, J. K. (2021). Anthrax surveillance and the limited overlap between obligate scavengers and endemic anthrax zones in the United States. Vector-Borne and Zoonotic Diseases, 21(9), 675-684.

Wilber, M. Q., DeMarchi, J., Fefferman, N. H., & Silk, M. J. (2022). High prevalence does not necessarily equal maintenance species: Avoiding biased claims of disease reservoirs when using surveillance data. Journal of Animal Ecology, 91(9), 1740-1754.

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Yang, A., Proffitt, K. M., Asher, V., Ryan, S. J., & Blackburn, J. K. (2021). Sex‐Specific Elk Resource Selection during the Anthrax Risk Period. The Journal of wildlife management, 85(1), 145-155.

Yifang, X., Jiannan, C., Shuai, L., Qiang, H., & Siyao, Z. (2021). Airborne infection risks of SARS-CoV-2 in US schools and impacts of different intervention strategies. Sustainable Cities and Society, 74, 103188.

Young, M. J., & Fefferman, N. H. (2022). The dynamics of disease mediated invasions by hosts with immune reproductive tradeoff. Scientific reports, 12(1), 4108.

Young, M. J., & Fefferman, N. H. (2023). A ‘Portfolio of Model Approximations’ approach to understanding invasion success with vector-borne disease. Mathematical Biosciences, 358, 108994.

Young, M. J., Silk, M. J., Pritchard, A. J., & Fefferman, N. H. (2022). Diversity in valuing social contact and risk tolerance leading to the emergence of homophily in populations facing infectious threats. Physical Review E, 105(4), 044315.

Young, M. J., Silk, M. J., Pritchard, A. J., & Fefferman, N. H. (2023). The interplay of social constraints and individual variation in risk tolerance in the emergence of superspreaders. Journal of the Royal Society Interface, 20(205), 20230077.